Comparar archivos binarios en C #

Solución:

static bool FileEquals(string fileName1, string fileName2)
{
    // Check the file size and CRC equality here.. if they are equal...    
    using (var file1 = new FileStream(fileName1, FileMode.Open))
        using (var file2 = new FileStream(fileName2, FileMode.Open))
            return FileStreamEquals(file1, file2);
}

static bool FileStreamEquals(Stream stream1, Stream stream2)
{
    const int bufferSize = 2048;
    byte[] buffer1 = new byte[bufferSize]; //buffer size
    byte[] buffer2 = new byte[bufferSize];
    while (true) {
        int count1 = stream1.Read(buffer1, 0, bufferSize);
        int count2 = stream2.Read(buffer2, 0, bufferSize);

        if (count1 != count2)
            return false;

        if (count1 == 0)
            return true;

        // You might replace the following with an efficient "memcmp"
        if (!buffer1.Take(count1).SequenceEqual(buffer2.Take(count2)))
            return false;
    }
}

Aceleré el “memcmp” usando una comparación Int64 en un bucle sobre los fragmentos de flujo de lectura. Esto redujo el tiempo a aproximadamente 1/4.

    private static bool StreamsContentsAreEqual(Stream stream1, Stream stream2)
    {
        const int bufferSize = 2048 * 2;
        var buffer1 = new byte[bufferSize];
        var buffer2 = new byte[bufferSize];

        while (true)
        {
            int count1 = stream1.Read(buffer1, 0, bufferSize);
            int count2 = stream2.Read(buffer2, 0, bufferSize);

            if (count1 != count2)
            {
                return false;
            }

            if (count1 == 0)
            {
                return true;
            }

            int iterations = (int)Math.Ceiling((double)count1 / sizeof(Int64));
            for (int i = 0; i < iterations; i++)
            {
                if (BitConverter.ToInt64(buffer1, i * sizeof(Int64)) != BitConverter.ToInt64(buffer2, i * sizeof(Int64)))
                {
                    return false;
                }
            }
        }
    }

Así es como lo haría si no quisiera confiar en crc:

    /// <summary>
    /// Binary comparison of two files
    /// </summary>
    /// <param name="fileName1">the file to compare</param>
    /// <param name="fileName2">the other file to compare</param>
    /// <returns>a value indicateing weather the file are identical</returns>
    public static bool CompareFiles(string fileName1, string fileName2)
    {
        FileInfo info1 = new FileInfo(fileName1);
        FileInfo info2 = new FileInfo(fileName2);
        bool same = info1.Length == info2.Length;
        if (same)
        {
            using (FileStream fs1 = info1.OpenRead())
            using (FileStream fs2 = info2.OpenRead())
            using (BufferedStream bs1 = new BufferedStream(fs1))
            using (BufferedStream bs2 = new BufferedStream(fs2))
            {
                for (long i = 0; i < info1.Length; i++)
                {
                    if (bs1.ReadByte() != bs2.ReadByte())
                    {
                        same = false;
                        break;
                    }
                }
            }
        }

        return same;
    }

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